| # | University | City | World rank | In-country | Citations |
|---|---|---|---|---|---|
| 101 | Universitas Pasundan | not ranked | #90 | 32,896 | |
| 102 | Universitas Jenderal Achmad Yani | not ranked | #91 | 32,841 | |
| 103 | Universitas Kristen Maranatha | not ranked | #93 | 32,720 | |
| 104 | Universitas Pakuan | not ranked | #92 | 32,689 | |
| 105 | Universitas Bhayangkara Jakarta Raya | not ranked | #96 | 31,319 | |
| 106 | Universitas Atma Jaya Yogyakarta | not ranked | #98 | 30,600 | |
| 107 | Universitas Islam Malang | not ranked | #99 | 29,730 | |
| 108 | Universitas 17 Agustus 1945 Surabaya | not ranked | #100 | 28,336 | |
| 109 | Universitas Yarsi | not ranked | #97 | 27,743 | |
| 110 | Universitas Tidar Magelang | not ranked | #101 | 27,414 | |
| 111 | Universitas Muhammadiyah Magelang | not ranked | #103 | 27,064 | |
| 112 | Universitas Khairun | not ranked | #106 | 25,624 | |
| 113 | Universitas Komputer Indonesia | not ranked | #104 | 25,205 | |
| 114 | Universitas Mahasaraswati Denpasar | not ranked | #107 | 25,119 | |
| 115 | Universitas HKBP Nommensen | not ranked | #102 | 24,751 | |
| 116 | Universitas Lancang Kuning | not ranked | #109 | 24,342 | |
| 117 | Politeknik Negeri Malang | not ranked | — | 23,624 | |
| 118 | Universitas Pekalongan | not ranked | #108 | 23,493 | |
| 119 | Universitas 17 Agustus 1945 Samarinda | not ranked | #111 | 22,546 | |
| 120 | Universitas Islam Sumatera Utara | not ranked | #113 | 21,630 | |
| 121 | Universitas Pembangunan Panca Budi | not ranked | #116 | 20,227 | |
| 122 | Universitas Islam Nusantara | not ranked | #114 | 20,020 | |
| 123 | Perbanas Institute | not ranked | #115 | 19,978 | |
| 124 | Universitas Wijaya Kusuma Purwokerto | not ranked | #117 | 18,677 | |
| 125 | Universitas Widyatama | not ranked | #118 | 16,476 | |
| 126 | Universitas Muhammadiyah Mataram | not ranked | #120 | 15,876 | |
| 127 | Universitas Kristen Duta Wacana | not ranked | #121 | 15,624 | |
| 128 | Universitas Wijaya Kusuma Surabaya | not ranked | #126 | 14,714 | |
| 129 | Universitas Kediri | not ranked | #122 | 14,631 | |
| 130 | Universitas 17 Agustus 1945 Semarang | not ranked | #124 | 14,624 | |
| 131 | Universitas Bung Hatta | not ranked | #123 | 14,238 | |
| 132 | Politeknik Negeri Padang | not ranked | — | 13,387 | |
| 133 | Universitas 17 Agustus 1945 Jakarta | not ranked | #127 | 12,989 | |
| 134 | Universitas Widya Gama Malang | not ranked | #130 | 12,460 | |
| 135 | Institut Teknologi Adhi Tama Surabaya | not ranked | #132 | 12,355 | |
| 136 | Swiss German University | not ranked | #131 | 12,347 | |
| 137 | Universitas Kristen Krida Wacana | not ranked | #129 | 12,230 | |
| 138 | Universitas Nusa Putra | not ranked | #134 | 11,947 | |
| 139 | Universitas Islam Syekh-Yusuf | not ranked | #135 | 11,637 | |
| 140 | Universitas Bojonegoro | not ranked | #136 | 10,697 | |
| 141 | Universitas Pancasakti Tegal | not ranked | #133 | 10,675 | |
| 142 | Universitas Putera Batam | not ranked | #137 | 10,578 | |
| 143 | Universitas Methodist Indonesia | not ranked | #125 | 10,213 | |
| 144 | Universitas Bakrie | not ranked | #139 | 9,896 | |
| 145 | Institut Sains dan Teknologi Al Kamal | not ranked | #141 | 9,447 | |
| 146 | Universitas Madura | not ranked | #142 | 9,071 | |
| 147 | Universitas Trilogi | not ranked | #140 | 8,997 | |
| 148 | Institut Sains & Teknologi Akprind | not ranked | #143 | 8,364 | |
| 149 | Universitas Simalungun | not ranked | #147 | 8,183 | |
| 150 | Universitas Krisnadwipayana | not ranked | #144 | 8,084 |
What the two columns mean
In-country is the position the ranking record gives the university among those in its own country, and it is often the more useful number: a university ranked 480th in the world may still be third at home. It is carried over as published, so it does not always follow the order of the other two columns. World rank is the university's QS World University Rankings position. Citations are the number of times work published by the university has been cited, as recorded in OpenAlex; it is the measure used to order universities that QS does not rank at all.
The two do not always agree. A large research university can out-cite a smaller one that sits above it in QS, because QS weighs reputation surveys and staff ratios as well as research.